Due to the wartime position the Branch moved south to Alice Springs in 1942. It is thought that the Branch moved back to Darwin in 1946, and that at the same time a permanent local office of the Branch was established in Alice Springs.
Due to changes within the Department of the Interior Structure, the Branch was technically a Section between 1941 and 1951. The title of the Native Affairs Branch was changed to Welfare Branch in 1955.
| Series Id | Series Title | Series Date Range | Number of Units | Public Access | Location |
| NTRS 3784 | Client files, single number | 1920 - 2008 | 482 | Agreement Pending | Darwin (NTAC) |
| NTRS 3690 | Correspondence files relating to alleviation of distress with 'A' prefix | 1939 - 2010 | 89 | Agreement Pending | Darwin (NTAC) |
| NTRS 3774 | Master index to correspondence files relating to alleviation of distress with 'A' prefix [NTRS 3690] | 1939 - 2002 | 1 | Restricted | Darwin (NTAC) |
| NTRS 3775 | Preservation copy of index to correspondence files relating to alleviation of distress with 'A' prefix [NTRS 3690] | 1939 - 2002 | 1 | Restricted | Darwin (NTAC) |
| NTRS 3776 | Reference copy of index to correspondence files relating to alleviation of distress with 'A' prefix [NTRS 3690] | 1939 - 2002 | 1 | Agreement Pending | Darwin (NTAC) |
| NTRS 3785 | Correspondence files, single number with "I" prefix | 1939 - 1985 | 26 | Agreement Pending | Darwin (NTAC) |
| NTRS 3756 | Correspondence files relating to children with 'C' prefix | 1940 - 2004 | 89 | Agreement Pending | Darwin (NTAC) |
| NTRS 3765 | Master index to correspondence files relating to children with 'C' prefix [NTRS 3756] | 1940 - 2004 | 1 | Agreement Pending | Darwin (NTAC) |
| NTRS 3766 | Preservation copy of index to correspondence files relating to children with 'C' prefix [NTRS 3756] | 1940 - 2004 | 1 | Agreement Pending | Darwin (NTAC) |
| NTRS 3767 | Reference copy of index to correspondence files relating to children with 'C' prefix [NTRS 3756];; | 1940 - 2004 | 1 | Agreement Pending | Darwin (NTAC) |
| NTRS 3755 | Correspondence files, annual single number | 1945 - 1994 | 410 | Agreement Pending | Darwin (NTAC) |
| NTRS 3762 | Master index to correspondence files, annual single number [NTRS 3755] | 1945 - 1994 | 1 | Agreement Pending | Darwin (NTAC) |
| NTRS 3763 | Preservation copy of index to correspondence files, annual single number [NTRS 3755] | 1945 - 1994 | 1 | Restricted | Darwin (NTAC) |
| NTRS 3764 | Reference copy of index to correspondence files, annual single number [NTRS 3755] | 1945 - 1994 | 1 | Agreement Pending | Darwin (NTAC) |
| NTRS 2277 | Welfare files of Albert Namatjira | 1949 - 1971 | 1 | Agreement Pending | Alice Springs |
| NTRS 2483 | Administration files, annual single number | 1949 - 1965 | 1 | Agreement Pending | Alice Springs |
| NTRS 3854 | Reference copies of welfare files of Albert Namatjira | 1949 - 1971 | 1 | Agreement Pending | Alice Springs |
| NTRS 3754 | Fostering files with 'F' prefix | 1950 - 1999 | 59 | Agreement Pending | Darwin (NTAC) |
| NTRS 3759 | Master index to correspondence files relating to fostering with 'F' prefix | 1950 - 1999 | 1 | Restricted | Darwin (NTAC) |
| NTRS 3760 | Preservation copy of index to correspondence files relating to fostering with 'F' prefix | 1950 - 1999 | 1 | Restricted | Darwin (NTAC) |
| NTRS 3761 | Reference copy of index to correspondence files relating to fostering with 'F' prefix | 1950 - 1999 | 1 | Agreement Pending | Darwin (NTAC) |
| NTRS 3757 | Correspondence files relating to state children with 'SC' prefix | 1952 - 1995 | 50 | Agreement Pending | Darwin (NTAC) |
| NTRS 3768 | Master index to correspondence files relating to state children with 'SC' prefix [NTRS 3757] | 1952 - 1995 | 1 | Agreement Pending | Darwin (NTAC) |
| NTRS 3769 | Preservation copy of index to correspondence files relating to state children with 'SC' prefix [NTRS 3757] | 1952 - 1995 | 1 | Agreement Pending | Darwin (NTAC) |
| NTRS 3770 | Reference copy of index to correspondence files relating to state children with 'SC' prefix [NTRS 3757] | 1952 - 1995 | 1 | Agreement Pending | Darwin (NTAC) |
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